Index

A

arcsinh_cofactor (twocan.IMCProcessor attribute), [1]

arcsinh_normalize (twocan.IMCProcessor attribute), [1] AsinhNorm (class in twocan)

B

binarization_threshold (twocan.IFProcessor attribute), [1] (twocan.IMCProcessor attribute), [1]

binarize (twocan.IFProcessor attribute), [1] (twocan.IMCProcessor attribute), [1]

C

configure() (twocan.IFProcessor method), [1] (twocan.IMCProcessor method), [1]

D

direction (twocan.ThresholdReachedCallback attribute), [1]

F

filepath (twocan.SaveTrialsDFCallback attribute), [1]

fit() (twocan.RegEstimator method), [1] fit_transform() (twocan.RegEstimator method), [1]

G

get_aligned_coordinates() (in module twocan)

get_merge() (in module twocan)

I

IFProcessor (class in twocan), [1] IMCProcessor (class in twocan), [1]

inverse() (twocan.AsinhNorm method) iou_corr_multi_objective() (in module twocan), [1] iou_corr_single_objective() (in module twocan), [1]

M

M_ (twocan.RegEstimator attribute), [1] matrices (twocan.MatrixConvergenceCallback attribute), [1] MatrixConvergenceCallback (class in twocan), [1] metric_name (twocan.ThresholdReachedCallback attribute), [1]

min_trials (twocan.MatrixConvergenceCallback attribute), [1] module twocan multi_channel_corr() (in module twocan), [1]

P

pick_best_registration() (in module twocan), [1]

plot_cartoon_affine() (in module twocan), [1] prep_zarr() (in module twocan), [1]

R

read_M() (in module twocan)

RegEstimator (class in twocan), [1] registration_trial() (in module twocan), [1]

S

save_frequency (twocan.SaveTrialsDFCallback attribute), [1] SaveTrialsDFCallback (class in twocan), [1] score() (twocan.RegEstimator method), [1]

set_score_request() (twocan.RegEstimator method), [1] sigma (twocan.IFProcessor attribute), [1] (twocan.IMCProcessor attribute), [1] stretch_255() (in module twocan)

T

threshold (twocan.ThresholdReachedCallback attribute), [1] ThresholdReachedCallback (class in twocan), [1] tolerance (twocan.MatrixConvergenceCallback attribute), [1]

transform() (twocan.RegEstimator method), [1] trial_count (twocan.SaveTrialsDFCallback attribute), [1] twocan module

W

window_size (twocan.MatrixConvergenceCallback attribute), [1]

winsorize_limits (twocan.IMCProcessor attribute), [1]

Y

y_shape_ (twocan.RegEstimator attribute), [1]